Hi all, we have Arvados 2.0 up and running. We are following the tutorial of simple Sort-Uniq workflow (https://doc.arvados.org/v2.0/user/composer/composer.html). Although the workflow and the tools are specified as CWL v1.0 on Composer, upon running Arvados gives an error saying:
Error: cwltool: Workflow error, try again with --debug for more information: Tool definition file:///var/lib/cwl/run/sort.cwl failed validation: The CWL reference runner no longer supports pre CWL v1.0 documents. Supported versions are: v1.0 v1.1 v1.1.0-dev1 (with --enable-dev flag only) v1.2.0-dev1 (with --enable-dev flag only) v1.2.0-dev2 (with --enable-dev flag only)
any ideas? another interesting seemingly bug (?) is the persistance of ‘sbg:x’ and ‘sbg:y’ parameters in the code even when the workflow version is v1.0, that results in a separate error telling that
URI prefix 'sbg' of 'sbg:y' not recognized, are you missing a $namespaces section?. we were able to get around this error by manually adding the below to the workflow code. any help would be greatly appreciated. PS. is sbg:draft-2 not supported?
$namespaces: sbg: https://sevenbridges.com